Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773534

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773534


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M161Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 3.4594 0.0000
2 ENSG00000212455 NA 2.8074 0.0000
3 ENSG00000250190 LINC02364 long intergenic non-protein coding RNA 2364 2.8074 0.0000
4 ENSG00000253619 novel transcript 2.8074 0.0001
5 ENSG00000228226 novel transcript 2.7415 0.0000
6 ENSG00000251527 novel transcript 2.5850 0.0004
7 ENSG00000273717 RN7SL343P RNA, 7SL, cytoplasmic 343, pseudogene 2.5850 0.0004
8 ENSG00000274570 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene 2.5850 0.0004
9 ENSG00000263396 LIM domain kinase 1 (LIMK1) pseudogene 2.4286 0.0000
10 ENSG00000259550 HNRNPA1P74 heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 2.3333 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000234349 GLUD1P9 glutamate dehydrogenase 1 pseudogene 9 -2.0000 0.0528
63172 ENSG00000233842 novel transcript -2.0000 1.0000
63171 ENSG00000233410 LINC01222 long intergenic non-protein coding RNA 1222 -2.0000 1.0000
63170 ENSG00000230261 OR52J2P olfactory receptor family 52 subfamily J member 2 pseudogene -2.0000 1.0000
63169 ENSG00000229752 RPL7P10 ribosomal protein L7 pseudogene 10 -2.0000 1.0000
63168 ENSG00000228734 novel transcript -2.0000 1.0000
63167 ENSG00000227408 AMYP1 amylase alpha pseudogene 1 -2.0000 1.0000
63166 ENSG00000227055 centrosomal protein 57kDa (CEP57) pseudogene -2.0000 0.0824
63165 ENSG00000226640 novel transcript -2.0000 1.0000
63164 ENSG00000226157 OR52E3P olfactory receptor family 52 subfamily E member 3 pseudogene -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...