Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773535


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M162Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249981 novel transcript 3.0000 0.0001
2 ENSG00000250387 LINC02197 long intergenic non-protein coding RNA 2197 3.0000 0.0001
3 ENSG00000146757 ZNF92 zinc finger protein 92 2.8074 0.0000
4 ENSG00000233272 PNPT1P2 polyribonucleotide nucleotidyltransferase 1 pseudogene 2 2.3774 0.0000
5 ENSG00000252149 RNA5SP315 RNA, 5S ribosomal pseudogene 315 2.3307 0.0000
6 ENSG00000229201 LINC02787 long intergenic non-protein coding RNA 2787 2.3219 0.0000
7 ENSG00000248511 novel transcript 2.3219 0.0000
8 ENSG00000254753 novel transcript 2.3219 0.0000
9 ENSG00000254895 MTCO3P15 MT-CO3 pseudogene 15 2.3219 0.0039
10 ENSG00000283246 MEP1AP1 meprin A subunit alpha pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000196387 ZNF140 zinc finger protein 140 -1.8164 0.0000
63172 ENSG00000181408 UTS2R urotensin 2 receptor -1.8163 0.0000
63171 ENSG00000246792 novel transcript -1.8162 0.0000
63170 ENSG00000276031 RN7SL197P RNA, 7SL, cytoplasmic 197, pseudogene -1.8160 0.0000
63169 ENSG00000276609 NA -1.8159 0.0000
63168 ENSG00000274695 novel transcript -1.8158 0.0000
63167 ENSG00000214558 zinc finger CCCH-type containing 11A (ZC3H11A) pseudogene -1.8157 0.0000
63166 ENSG00000255251 PRR23D1 proline rich 23 domain containing 1 -1.8155 0.0000
63165 ENSG00000239268 novel transcript -1.8155 0.0000
63164 ENSG00000103254 ANTKMT adenine nucleotide translocase lysine methyltransferase -1.8154 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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