Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773536


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M163Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226683 PWWP2AP1 PWWP domain containing 2A pseudogene 1 2.8074 0.0001
2 ENSG00000225498 novel transcript 2.5850 0.0003
3 ENSG00000265859 MIR5704 microRNA 5704 2.5221 0.0000
4 ENSG00000249599 BMPR1B-DT BMPR1B divergent transcript 2.5189 0.0000
5 ENSG00000212611 Small nucleolar RNA SNORD30 2.3219 0.0014
6 ENSG00000220030 proteasome subunit alpha type 4 (PROS29) pseudogene 2.3219 0.0014
7 ENSG00000221996 OR52B4 olfactory receptor family 52 subfamily B member 4 2.3219 0.0014
8 ENSG00000225883 BMS1P11 BMS1 pseudogene 11 2.3219 0.0000
9 ENSG00000259941 novel transcript 2.3219 0.0000
10 ENSG00000267428 dynactin associated protein (DYNAP) pseudogene 2.3219 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270760 novel transcript, antisense to CAPNS1 -2.0754 0.0000
63172 ENSG00000250973 KRTAP13-6P keratin associated protein 13-6, pseudogene -2.0753 0.0001
63171 ENSG00000201263 SNORD114-6 small nucleolar RNA, C/D box 114-6 -2.0752 0.0056
63170 ENSG00000200832 SNORD114-4 small nucleolar RNA, C/D box 114-4 -2.0752 0.0056
63169 ENSG00000200150 NA -2.0752 0.0056
63168 ENSG00000199798 SNORD114-5 small nucleolar RNA, C/D box 114-5 -2.0752 0.0056
63167 ENSG00000254966 novel transcript -2.0743 0.0000
63166 ENSG00000145990 GFOD1 glucose-fructose oxidoreductase domain containing 1 -2.0740 0.0000
63165 ENSG00000133318 RTN3 reticulon 3 -2.0740 0.0000
63164 ENSG00000144647 POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) -2.0733 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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