Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773537


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M164Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252498 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene 3.0000 0.0000
2 ENSG00000264678 MIR3140 microRNA 3140 2.6923 0.0000
3 ENSG00000227358 proteasome subunit, alpha type, 7 (PSMA7) pseudogene 2.6142 0.0000
4 ENSG00000233709 MTND4P28 MT-ND4 pseudogene 28 2.6125 0.0000
5 ENSG00000224786 CETN4P centrin 4, pseudogene 2.5850 0.0000
6 ENSG00000278892 novel transcript 2.5850 0.0002
7 ENSG00000250551 MIR583HG MIR583 host gene 2.4875 0.0000
8 ENSG00000230556 pseudogene similar to part of thioredoxin domain containing 11 (TXNDC11) 2.4534 0.0000
9 ENSG00000254571 novel transcript 2.4534 0.0000
10 ENSG00000266262 MIR4428 microRNA 4428 2.4518 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000168621 GDNF glial cell derived neurotrophic factor -2.1642 0.0000
63172 ENSG00000282393 novel transcript -2.1640 0.0000
63171 ENSG00000173334 TRIB1 tribbles pseudokinase 1 -2.1638 0.0000
63170 ENSG00000230449 RPL7P4 ribosomal protein L7 pseudogene 4 -2.1638 0.0000
63169 ENSG00000237233 TMEM26-AS1 TMEM26 antisense RNA 1 -2.1631 0.0000
63168 ENSG00000079931 MOXD1 monooxygenase DBH like 1 -2.1631 0.0000
63167 ENSG00000106524 ANKMY2 ankyrin repeat and MYND domain containing 2 -2.1627 0.0000
63166 ENSG00000104472 CHRAC1 chromatin accessibility complex subunit 1 -2.1621 0.0000
63165 ENSG00000254370 novel transcript -2.1620 0.0000
63164 ENSG00000258096 novel transcript, antisense to SLC38A2 -2.1617 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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