Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773538


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M165Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248987 PRDX4P1 peroxiredoxin 4 pseudogene 1 3.0000 0.0000
2 ENSG00000281593 novel protein, ZNRF2-LINC01176 readthrough 2.8074 0.0000
3 ENSG00000202019 Y RNA 2.5850 0.0000
4 ENSG00000202379 Small nucleolar RNA SNORA70 2.5850 0.0002
5 ENSG00000224599 BMS1P12 BMS1 pseudogene 12 2.5850 0.0000
6 ENSG00000233557 NFU1P2 NFU1 iron-sulfur cluster scaffold pseudogene 2 2.5850 0.0000
7 ENSG00000276763 ribosomal protein L10 (RPL10) pseudogene 2.5850 0.0002
8 ENSG00000283130 mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene 2.5850 0.0002
9 ENSG00000273701 NA 2.5192 0.0000
10 ENSG00000282137 OR4G3P olfactory receptor family 4 subfamily G member 3 pseudogene 2.5161 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000201788 Y RNA -2.2391 0.0000
63172 ENSG00000168556 ING2 inhibitor of growth family member 2 -2.2389 0.0000
63171 ENSG00000261793 novel transcript, TMEM210 and LRRC26 readthrough -2.2386 0.0000
63170 ENSG00000187553 CYP26C1 cytochrome P450 family 26 subfamily C member 1 -2.2386 0.0000
63169 ENSG00000255091 novel transcript -2.2384 0.0000
63167 ENSG00000228791 THRB-AS1 THRB antisense RNA 1 -2.2383 0.0000
63166 ENSG00000278958 novel transcript -2.2381 0.1398
10 ENSG00000282137 OR4G3P olfactory receptor family 4 subfamily G member 3 pseudogene 2.5161 0.0000
9 ENSG00000273701 NA 2.5192 0.0000
8 ENSG00000283130 mitochondrially encoded NADH dehydrogenase 5 (MT-ND5) pseudogene 2.5850 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...