Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773539


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M166Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207177 NA 3.8566 0.0000
2 ENSG00000270516 cereblon, pseudogene 3.5694 0.0000
3 ENSG00000183706 OR4N4 olfactory receptor family 4 subfamily N member 4 3.3219 0.0000
4 ENSG00000260094 LINC00564 long intergenic non-protein coding RNA 564 3.1699 0.0000
5 ENSG00000230804 CDRT15P14 CDRT15 pseudogene 14 3.0309 0.0000
6 ENSG00000251424 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 3.0000 0.0000
7 ENSG00000253108 novel transcript 2.9886 0.0000
8 ENSG00000238680 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene 2.8074 0.0001
9 ENSG00000255501 CARD18 caspase recruitment domain family member 18 2.8074 0.0001
10 ENSG00000279733 novel transcript 2.7956 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000278456 novel transcript, antisense to ALDH1A3 -2.3109 0.0000
63172 ENSG00000273820 USP27X ubiquitin specific peptidase 27 X-linked -2.3109 0.0000
63171 ENSG00000277449 CEBPB-AS1 CEBPB antisense RNA 1 -2.3108 0.0000
63170 ENSG00000225929 novel transcript -2.3106 0.0000
63169 ENSG00000103260 METRN meteorin, glial cell differentiation regulator -2.3100 0.0000
63168 ENSG00000115665 SLC5A7 solute carrier family 5 member 7 -2.3095 0.0000
63167 ENSG00000274740 NA -2.3092 0.0000
63166 ENSG00000249504 PCDHA14 protocadherin alpha 14 pseudogene -2.3084 0.0000
63165 ENSG00000131187 F12 coagulation factor XII -2.3084 0.0000
63164 ENSG00000123570 RAB9B RAB9B, member RAS oncogene family -2.3083 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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