Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773540

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773540


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M167Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.8074 0.0000
2 ENSG00000259244 novel transcript 2.6962 0.0000
3 ENSG00000232982 MTCO1P45 MT-CO1 pseudogene 45 2.5207 0.0000
4 ENSG00000238789 RNU7-152P RNA, U7 small nuclear 152 pseudogene 2.4534 0.0000
5 ENSG00000213673 SLC25A5P3 solute carrier family 25 member 5 pseudogene 3 2.3219 0.0010
6 ENSG00000222715 MIR1911 microRNA 1911 2.3219 0.0010
7 ENSG00000226680 novel transcript 2.3219 0.0010
8 ENSG00000227480 CCDC148-AS1 CCDC148 antisense RNA 1 2.3219 0.0010
9 ENSG00000231201 novel transcript 2.3219 0.0010
10 ENSG00000236666 POTEH-AS1 POTEH antisense RNA 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000173404 INSM1 INSM transcriptional repressor 1 -1.9091 0.0000
63172 ENSG00000163288 GABRB1 gamma-aminobutyric acid type A receptor subunit beta1 -1.9087 0.0000
63171 ENSG00000275202 novel transcript, antisense to FNDC3A -1.9085 0.0000
63170 ENSG00000197982 C1orf122 chromosome 1 open reading frame 122 -1.9085 0.0000
63169 ENSG00000124570 SERPINB6 serpin family B member 6 -1.9084 0.0000
63168 ENSG00000268486 ankyrin repeat domain 30B (ANKRD30B) pseudogene -1.9083 0.0000
63167 ENSG00000259725 novel transcript -1.9083 0.0000
63166 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -1.9076 0.0000
63165 ENSG00000247970 novel transcript -1.9073 0.0000
63164 ENSG00000207955 novel transcript -1.9067 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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