Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773541

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773541


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M168Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 3.0000 0.0000
2 ENSG00000253215 novel transcript 2.8074 0.0001
3 ENSG00000249998 novel transcript 2.6230 0.0000
4 ENSG00000252015 RNU6-904P RNA, U6 small nuclear 904, pseudogene 2.5850 0.0003
5 ENSG00000229919 ELOCP3 elongin C pseudogene 3 2.5714 0.0000
6 ENSG00000197692 CBX3P7 chromobox 3 pseudogene 7 2.3219 0.0014
7 ENSG00000234877 novel transcript 2.3219 0.0014
8 ENSG00000257587 novel transcript 2.3219 0.0000
9 ENSG00000259582 novel transcript 2.3219 0.0014
10 ENSG00000279401 TEC 2.3219 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000147475 ERLIN2 ER lipid raft associated 2 -2.1125 0.0000
63172 ENSG00000272676 OR5AO1P olfactory receptor family 5 subfamily AO member 1 pseudogene -2.1124 0.0362
63171 ENSG00000278647 CDK2AP2P1 cyclin dependent kinase 2 associated protein 2 pseudogene 1 -2.1117 0.0000
63170 ENSG00000223138 RNA5SP450 RNA, 5S ribosomal pseudogene 450 -2.1111 0.0000
63169 ENSG00000140675 SLC5A2 solute carrier family 5 member 2 -2.1110 0.0000
63168 ENSG00000265193 MIR3923 microRNA 3923 -2.1108 0.0000
63167 ENSG00000162676 GFI1 growth factor independent 1 transcriptional repressor -2.1108 0.0000
63166 ENSG00000237512 UNC5B-AS1 UNC5B antisense RNA 1 -2.1103 0.0000
63165 ENSG00000179922 ZNF784 zinc finger protein 784 -2.1102 0.0000
63164 ENSG00000136099 PCDH8 protocadherin 8 -2.1101 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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