Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773542


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M169Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275856 NA 3.0000 0.0000
2 ENSG00000261823 novel transcript 2.9727 0.0000
3 ENSG00000207138 RNU6-869P RNA, U6 small nuclear 869, pseudogene 2.5850 0.0000
4 ENSG00000207312 RNU6-429P RNA, U6 small nuclear 429, pseudogene 2.5850 0.0000
5 ENSG00000216616 ribosomal protein L27A (RPL27A) pseudogene 2.5850 0.0000
6 ENSG00000225581 TRIM53AP tripartite motif containing 53A, pseudogene 2.5850 0.0002
7 ENSG00000228898 MTCO1P43 MT-CO1 pseudogene 43 2.5850 0.0000
8 ENSG00000230158 MTND1P28 MT-ND1 pseudogene 28 2.5850 0.0000
9 ENSG00000230950 MTND2P21 MT-ND2 pseudogene 21 2.5850 0.0000
10 ENSG00000278281 MIR7856 microRNA 7856 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000170185 USP38 ubiquitin specific peptidase 38 -2.0375 0.0000
63172 ENSG00000267355 RPL9P29 ribosomal protein L9 pseudogene 29 -2.0374 0.0000
63171 ENSG00000251357 novel protein -2.0372 0.0000
63170 ENSG00000128274 A4GALT alpha 1,4-galactosyltransferase (P blood group) -2.0370 0.0000
63169 ENSG00000100580 TMED8 transmembrane p24 trafficking protein family member 8 -2.0367 0.0000
63168 ENSG00000274503 transmembrane protein 61 (TMEM61) pseudogene -2.0362 0.0000
63167 ENSG00000122376 SHLD2 shieldin complex subunit 2 -2.0362 0.0000
63166 ENSG00000113638 TTC33 tetratricopeptide repeat domain 33 -2.0354 0.0000
63165 ENSG00000262352 LINC02564 long intergenic non-protein coding RNA 2564 -2.0352 0.0000
63164 ENSG00000238423 SNORD42B small nucleolar RNA, C/D box 42B -2.0345 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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