Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773543


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M170Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253423 sulfite oxidase (SUOX) pseudogene 3.0000 0.0000
2 ENSG00000223208 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene 2.9358 0.0000
3 ENSG00000228074 UBBP5 ubiquitin B pseudogene 5 2.3906 0.0000
4 ENSG00000134007 ADAM20 ADAM metallopeptidase domain 20 2.3219 0.0011
5 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.3219 0.0011
6 ENSG00000271369 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa, pseudogene 2.2581 0.0000
7 ENSG00000283885 MIR3714 microRNA 3714 2.2516 0.0000
8 ENSG00000143631 FLG filaggrin 2.2381 0.0000
9 ENSG00000257703 novel transcript 2.2146 0.0000
10 ENSG00000225616 ribosomal protein L27 (RPL27) pseudogene 2.1849 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000226800 CACTIN-AS1 CACTIN antisense RNA 1 -2.0621 0.0000
63172 ENSG00000011007 ELOA elongin A -2.0614 0.0000
63171 ENSG00000260107 novel transcript -2.0613 0.0000
63170 ENSG00000115540 MOB4 MOB family member 4, phocein -2.0611 0.0000
63169 ENSG00000215474 SKOR2 SKI family transcriptional corepressor 2 -2.0603 0.0000
63168 ENSG00000102760 RGCC regulator of cell cycle -2.0602 0.0000
63167 ENSG00000256463 SALL3 spalt like transcription factor 3 -2.0601 0.0000
63165 ENSG00000241439 pseudogene similar to part of fibrosin-like 1 (FBRSL1) -2.0597 0.0000
63164 ENSG00000283380 novel transcript -2.0586 0.0000
10 ENSG00000225616 ribosomal protein L27 (RPL27) pseudogene 2.1849 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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