Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773544


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M171Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236433 RPL37P21 ribosomal protein L37 pseudogene 21 3.1699 0.0000
2 ENSG00000251266 LINC02429 long intergenic non-protein coding RNA 2429 3.1699 0.0000
3 ENSG00000273138 novel transcript, antisense to PON2 3.1699 0.0000
4 ENSG00000231718 LINC02789 long intergenic non-protein coding RNA 2789 3.0000 0.0000
5 ENSG00000278971 TEC 3.0000 0.0000
6 ENSG00000218475 ACTG1P18 actin gamma 1 pseudogene 18 2.9962 0.0000
7 ENSG00000241772 novel transcript 2.8617 0.0000
8 ENSG00000228309 LINC01350 long intergenic non-protein coding RNA 1350 2.8074 0.0001
9 ENSG00000232466 H3P31 H3 histone pseudogene 31 2.8074 0.0000
10 ENSG00000252066 RNU2-53P RNA, U2 small nuclear 53, pseudogene 2.7732 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000223837 novel transcript -2.3250 0.0000
63172 ENSG00000260211 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 (HCN2) pseudogene -2.3248 0.0000
63171 ENSG00000259970 novel transcript -2.3246 0.0000
63170 ENSG00000107295 SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 -2.3239 0.0000
63169 ENSG00000272884 novel transcript -2.3234 0.0000
63168 ENSG00000267317 novel transcript, antisense to APC2 -2.3233 0.0000
63167 ENSG00000278901 novel transcript, antisense to PCDHA13 -2.3231 0.0000
63166 ENSG00000188613 NANOS1 nanos C2HC-type zinc finger 1 -2.3229 0.0000
63165 ENSG00000180549 FUT7 fucosyltransferase 7 -2.3228 0.0000
63164 ENSG00000124160 NCOA5 nuclear receptor coactivator 5 -2.3226 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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