Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773545


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M172Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200313 RNA5-8SP7 RNA, 5.8S ribosomal pseudogene 7 3.4594 0.0000
2 ENSG00000257735 novel transcript, antisense to ZNF641 3.3478 0.0000
3 ENSG00000232300 FAM215B family with sequence similarity 215 member B 3.2857 0.0000
4 ENSG00000237072 novel pseudogene 3.2206 0.0000
5 ENSG00000222343 RN7SKP139 RN7SK pseudogene 139 3.1699 0.0000
6 ENSG00000266063 MIR4771-2 microRNA 4771-2 3.1374 0.0000
7 ENSG00000167528 ZNF641 zinc finger protein 641 3.1231 0.0000
8 ENSG00000233211 GRPEL2P1 GRPEL2 pseudogene 1 3.0000 0.0000
9 ENSG00000271652 chromosome X open reading frame 40A (CXorf40A) pseudogene 3.0000 0.0000
10 ENSG00000271986 RN7SL827P RNA, 7SL, cytoplasmic 827, pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000258301 VASH1-AS1 VASH1 antisense RNA 1 -2.5256 0.0000
63172 ENSG00000122574 WIPF3 WAS/WASL interacting protein family member 3 -2.5251 0.0000
63171 ENSG00000271192 novel transcript -2.5249 0.0000
63170 ENSG00000147403 RPL10 ribosomal protein L10 -2.5246 0.0000
63169 ENSG00000123999 INHA inhibin subunit alpha -2.5227 0.0000
63167 ENSG00000264970 WEE1 homolog (S. pombe) (WEE1) pseudogene -2.5216 0.0005
63166 ENSG00000278657 novel transcript -2.5203 0.0000
63165 ENSG00000254561 novel transcript, antisense to PVRL1 -2.5199 0.0000
63164 ENSG00000261044 novel transcript, antisense to ARC -2.5195 0.0000
10 ENSG00000271986 RN7SL827P RNA, 7SL, cytoplasmic 827, pseudogene 3.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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