Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773546


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M173Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000021574 SPAST spastin 3.3219 0.0000
2 ENSG00000163807 KIAA1143 KIAA1143 3.3219 0.0000
3 ENSG00000222499 RN7SKP177 RN7SK pseudogene 177 3.3219 0.0000
4 ENSG00000242537 MRE11P1 MRE11 homolog, double strand break repair nuclease pseudogene 1 3.3219 0.0000
5 ENSG00000229722 novel transcript 3.2156 0.0000
6 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 3.1699 0.0000
7 ENSG00000252574 RNU5B-6P RNA, U5B small nuclear 6, pseudogene 3.1699 0.0000
8 ENSG00000237350 CDC42P6 cell division cycle 42 pseudogene 6 3.0396 0.0000
9 ENSG00000251482 AKIRIN2P1 akirin 2 pseudogene 1 3.0222 0.0000
10 ENSG00000175664 TEX26 testis expressed 26 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000236875 DDX11L5 DEAD/H-box helicase 11 like 5 (pseudogene) -2.5157 0.0000
63172 ENSG00000258399 novel transcript -2.5152 0.0000
63171 ENSG00000224027 novel transcript -2.5146 0.0000
63170 ENSG00000136159 NUDT15 nudix hydrolase 15 -2.5143 0.0000
63169 ENSG00000231050 novel transcript -2.5137 0.0000
63168 ENSG00000279970 TEC -2.5135 0.0000
63167 ENSG00000138686 BBS7 Bardet-Biedl syndrome 7 -2.5125 0.0000
63166 ENSG00000253099 RNU2-60P RNA, U2 small nuclear 60, pseudogene -2.5125 0.0000
63165 ENSG00000237936 single-stranded DNA binding protein (SSBP1)(SSBP) pseudogene -2.5124 0.0030
63164 ENSG00000273888 FRMD6-AS1 FRMD6 antisense RNA 1 -2.5113 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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