Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773547

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773547


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M174Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000267524 RPSAP57 ribosomal protein SA pseudogene 57 3.3219 0.0000
2 ENSG00000212539 Small nucleolar RNA U3 3.1699 0.0000
3 ENSG00000258892 novel transcript 3.1699 0.0000
4 ENSG00000198019 FCGR1B Fc fragment of IgG receptor Ib 3.0000 0.0000
5 ENSG00000221930 DENND10P1 DENND10 pseudogene 1 3.0000 0.0000
6 ENSG00000252537 NA 3.0000 0.0000
7 ENSG00000233852 novel transcript 2.9886 0.0000
8 ENSG00000203942 C10orf62 chromosome 10 open reading frame 62 2.8074 0.0001
9 ENSG00000224152 novel transcript, antisense to BAZ2B 2.8074 0.0001
10 ENSG00000233663 melanoma antigen pseudogene 2.8074 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000244115 DNAJC25-GNG10 DNAJC25-GNG10 readthrough -2.1414 0.0000
63172 ENSG00000204175 GPRIN2 G protein regulated inducer of neurite outgrowth 2 -2.1413 0.0000
63171 ENSG00000170791 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 -2.1411 0.0000
63170 ENSG00000266168 MIR3147 microRNA 3147 -2.1408 0.0000
63169 ENSG00000202309 Y RNA -2.1403 0.0000
63168 ENSG00000229951 uncharacterized protein FLJ31356 -2.1400 0.0000
63167 ENSG00000267342 novel transcript, antisense to MRPL38 -2.1399 0.0000
63166 ENSG00000261120 novel transcript, antisense to LRRC9 -2.1397 0.0000
63165 ENSG00000135116 HRK harakiri, BCL2 interacting protein -2.1396 0.0000
63164 ENSG00000152904 GGPS1 geranylgeranyl diphosphate synthase 1 -2.1389 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...