Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773549

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773549


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M176Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230022 FNTAP2 farnesyltransferase, CAAX box, alpha pseudogene 2 3.1699 0.0000
2 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 3.0303 0.0000
3 ENSG00000236818 ARL5AP2 ARL5A pseudogene 2 2.8937 0.0000
4 ENSG00000235612 novel transcript 2.8575 0.0000
5 ENSG00000250223 LINC01216 long intergenic non-protein coding RNA 1216 2.8074 0.0000
6 ENSG00000253383 60S ribosomal protein L36 (RPL36) pseudogene 2.8074 0.0001
7 ENSG00000236921 novel transcript 2.7974 0.0000
8 ENSG00000207440 RNU6-541P RNA, U6 small nuclear 541, pseudogene 2.7273 0.0000
9 ENSG00000213731 RAB5CP1 RAB5C, member RAS oncogene family pseudogene 1 2.6010 0.0000
10 ENSG00000170790 OR10A2 olfactory receptor family 10 subfamily A member 2 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000227406 RNF6P1 ring finger protein 6 pseudogene 1 -2.0741 0.0000
63172 ENSG00000229389 tight junction protein 1 (zona occludens 1) (TJP1) pseudogene -2.0735 0.0000
63171 ENSG00000211805 TRAV24 T cell receptor alpha variable 24 -2.0731 0.0000
63170 ENSG00000280057 TEC -2.0729 0.0000
63169 ENSG00000235173 HGH1 HGH1 homolog -2.0729 0.0000
63168 ENSG00000130589 HELZ2 helicase with zinc finger 2 -2.0722 0.0000
63167 ENSG00000188112 C6orf132 chromosome 6 open reading frame 132 -2.0717 0.0000
63165 ENSG00000186297 GABRA5 gamma-aminobutyric acid type A receptor subunit alpha5 -2.0716 0.0000
63164 ENSG00000241570 PAQR9-AS1 PAQR9 antisense RNA 1 -2.0707 0.0000
10 ENSG00000170790 OR10A2 olfactory receptor family 10 subfamily A member 2 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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