Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773550

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773550


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M177Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258501 EIF3LP1 eukaryotic translation initiation factor 3 subunit L pseudogene 1 3.3219 0.0000
2 ENSG00000278472 novel transcript, sense intronic to AVEN 3.1699 0.0000
3 ENSG00000233040 FAM204BP family with sequence similarity 204 member B, pseudogene 3.0000 0.0000
4 ENSG00000251348 HSPD1P11 heat shock protein family D (Hsp60) member 1 pseudogene 11 3.0000 0.0000
5 ENSG00000270390 SFXN4P1 SFXN4 pseudogene 1 3.0000 0.0000
6 ENSG00000271576 novel transcript 3.0000 0.0000
7 ENSG00000232392 GOT2P7 GOT2 pseudogene 7 2.8219 0.0000
8 ENSG00000101843 PSMD10 proteasome 26S subunit, non-ATPase 10 2.8074 0.0000
9 ENSG00000188831 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 2.8074 0.0000
10 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000170035 UBE2E3 ubiquitin conjugating enzyme E2 E3 -2.3038 0.0000
63172 ENSG00000278646 novel protein similar to cancer/testis antigen family 47, member A12 (CT47A12) -2.3036 0.0000
63171 ENSG00000253806 novel transcript -2.3034 0.0000
63170 ENSG00000238007 novel transcript -2.3031 0.0000
63169 ENSG00000087250 MT3 metallothionein 3 -2.3019 0.0000
63168 ENSG00000267735 novel transcript, antisense to DNASE2 -2.3018 0.0000
63167 ENSG00000104332 SFRP1 secreted frizzled related protein 1 -2.3013 0.0000
63166 ENSG00000283380 novel transcript -2.3012 0.0000
63165 ENSG00000107807 TLX1 T cell leukemia homeobox 1 -2.3010 0.0000
63164 ENSG00000224504 novel transcript -2.3009 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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