Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773551

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773551


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M178Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224462 C4BPAP1 C4BPA pseudogene 1 3.7004 0.0000
2 ENSG00000217331 protein phosphatase 1, catalytic subunit (PPP1C) pseudogene 2.5850 0.0001
3 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.4286 0.0000
4 ENSG00000205636 LINC00583 long intergenic non-protein coding RNA 583 2.3774 0.0000
5 ENSG00000238835 SCARNA18 small Cajal body-specific RNA 18 2.3538 0.0000
6 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 2.3219 0.0000
7 ENSG00000226750 pseudogene similar to part of excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3) 2.3219 0.0005
8 ENSG00000226883 novel transcript 2.3219 0.0005
9 ENSG00000238061 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7) pseudogene 2.3219 0.0005
10 ENSG00000252050 NA 2.3219 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000276644 DACH1 dachshund family transcription factor 1 -2.2672 0.0000
63172 ENSG00000225180 PVALEF parvalbumin like EF-hand containing -2.2666 0.0000
63171 ENSG00000265293 ARGFXP2 arginine-fifty homeobox pseudogene 2 -2.2662 0.0000
63170 ENSG00000139200 PIANP PILR alpha associated neural protein -2.2659 0.0000
63169 ENSG00000211693 TRGV11 T cell receptor gamma variable 11 (non-functional) -2.2658 0.0000
63168 ENSG00000264145 dopamine receptor D5 (DRD5) pseudogene -2.2656 0.0000
63167 ENSG00000254231 novel transcript -2.2650 0.0000
63166 ENSG00000272768 novel transcript, antisense to PURB -2.2650 0.0000
63165 ENSG00000231806 PCAT7 prostate cancer associated transcript 7 -2.2642 0.0000
63164 ENSG00000178093 TSSK6 testis specific serine kinase 6 -2.2641 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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