Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773552

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773552


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M179Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000083622 novel transcript, antisense to CFTR 3.5850 0.0000
2 ENSG00000225122 eukaryotic translation initiation factor 3, subunit 1 alpha, 35 kDa (EIF3S1) pseudogene 3.5850 0.0000
3 ENSG00000200151 RN7SKP231 RN7SK pseudogene 231 3.4594 0.0000
4 ENSG00000229051 LINC01788 long intergenic non-protein coding RNA 1788 3.3219 0.0000
5 ENSG00000232271 novel transcript 3.3219 0.0000
6 ENSG00000242850 RPL23AP68 ribosomal protein L23a pseudogene 68 3.3219 0.0000
7 ENSG00000256389 novel transcript 3.3219 0.0000
8 ENSG00000228042 M6PRP1 M6PR pseudogene 1 3.1699 0.0000
9 ENSG00000230039 CCNYL5 cyclin Y like 5 (pseudogene) 3.1699 0.0000
10 ENSG00000234422 UBE2WP1 ubiquitin conjugating enzyme E2 W pseudogene 1 3.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000282057 novel transcript -2.4312 0.0000
63172 ENSG00000104888 SLC17A7 solute carrier family 17 member 7 -2.4311 0.0000
63171 ENSG00000188996 HUS1B HUS1 checkpoint clamp component B -2.4308 0.0000
63170 ENSG00000163734 CXCL3 C-X-C motif chemokine ligand 3 -2.4303 0.0000
63169 ENSG00000274376 ADAMTS7P1 ADAMTS7 pseudogene 1 -2.4301 0.0000
63168 ENSG00000264647 novel transcript, antisense to ANKRD13B -2.4294 0.0000
63167 ENSG00000272622 novel transcript -2.4288 0.0000
63166 ENSG00000106305 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 -2.4278 0.0000
63165 ENSG00000161610 HCRT hypocretin neuropeptide precursor -2.4276 0.0000
63164 ENSG00000273413 novel transcript, antisense to ADIRF -2.4275 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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