Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773553

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773553


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M180Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249994 novel transcript 3.0000 0.0000
2 ENSG00000242021 novel transcript 2.9769 0.0000
3 ENSG00000201423 RN7SKP246 RN7SK pseudogene 246 2.8873 0.0000
4 ENSG00000223152 RNU4-88P RNA, U4 small nuclear 88, pseudogene 2.8774 0.0000
5 ENSG00000175143 OR2T1 olfactory receptor family 2 subfamily T member 1 2.8074 0.0000
6 ENSG00000185903 OR11N1P olfactory receptor family 11 subfamily N member 1 pseudogene 2.8074 0.0000
7 ENSG00000221782 MIR548F2 microRNA 548f-2 2.8074 0.0000
8 ENSG00000242246 mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene 2.8074 0.0000
9 ENSG00000265328 MIR548AB microRNA 548ab 2.8074 0.0000
10 ENSG00000270611 eukaryotic translation elongation factor 1 alpha 1, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259523 novel transcript, antisense to TJP1 -2.3785 0.0000
63172 ENSG00000164620 RELL2 RELT like 2 -2.3784 0.0000
63171 ENSG00000224958 PGM5-AS1 PGM5 antisense RNA 1 -2.3784 0.0000
63170 ENSG00000227836 ribosomal protein S20 (RPS20) pseudogene -2.3782 0.0000
63168 ENSG00000274322 novel protein -2.3774 0.0000
63167 ENSG00000165879 FRAT1 FRAT regulator of WNT signaling pathway 1 -2.3773 0.0000
63166 ENSG00000267062 novel transcript, antisense to PRDX2 -2.3769 0.0000
63165 ENSG00000255404 novel transcript -2.3758 0.0000
63164 ENSG00000124216 SNAI1 snail family transcriptional repressor 1 -2.3755 0.0000
10 ENSG00000270611 eukaryotic translation elongation factor 1 alpha 1, pseudogene 2.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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