Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773554

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773554


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M181Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000270976 ubiquitin C (UBC) pseudogene 3.0222 0.0000
2 ENSG00000222042 novel transcript 3.0000 0.0000
3 ENSG00000254677 OSBPL9P2 oxysterol binding protein like 9 pseudogene 2 2.8074 0.0000
4 ENSG00000255070 OSBPL9P3 oxysterol binding protein like 9 pseudogene 3 2.8074 0.0000
5 ENSG00000147003 CLTRN collectrin, amino acid transport regulator 2.6025 0.0000
6 ENSG00000198416 ZNF658B zinc finger protein 658B (pseudogene) 2.5850 0.0002
7 ENSG00000248191 PES1P1 pescadillo ribosomal biogenesis factor 1 pseudogene 1 2.5850 0.0002
8 ENSG00000227694 RPL23AP74 ribosomal protein L23a pseudogene 74 2.4818 0.0000
9 ENSG00000267207 novel transcript, antisense to BCAS3 2.4818 0.0000
10 ENSG00000267449 novel transcript, antisense to BCAS3 2.4818 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000117408 IPO13 importin 13 -2.1314 0.0000
63172 ENSG00000241439 pseudogene similar to part of fibrosin-like 1 (FBRSL1) -2.1313 0.0000
63171 ENSG00000258778 EIF2S2P1 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 1 -2.1312 0.0000
63170 ENSG00000252749 RNU7-116P RNA, U7 small nuclear 116 pseudogene -2.1312 0.0000
63169 ENSG00000259603 novel transcript, antisense to IRX1 -2.1311 0.0000
63168 ENSG00000211920 IGHD6-13 immunoglobulin heavy diversity 6-13 -2.1303 0.0000
63167 ENSG00000198355 PIM3 Pim-3 proto-oncogene, serine/threonine kinase -2.1301 0.0000
63166 ENSG00000283829 MIR378I microRNA 378i -2.1301 0.0000
63165 ENSG00000131187 F12 coagulation factor XII -2.1299 0.0000
63164 ENSG00000129514 FOXA1 forkhead box A1 -2.1294 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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