Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773556


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M183Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224326 novel transcript 3.5850 0.0000
2 ENSG00000201567 RNA5SP510 RNA, 5S ribosomal pseudogene 510 2.8074 0.0000
3 ENSG00000254564 retinitis pigmentosa GTPase regulator (RPGR) pseudogene 2.8074 0.0000
4 ENSG00000173862 novel transcript 2.7560 0.0000
5 ENSG00000265315 RN7SL199P RNA, 7SL, cytoplasmic 199, pseudogene 2.6302 0.0000
6 ENSG00000237767 LINC01370 long intergenic non-protein coding RNA 1370 2.5850 0.0000
7 ENSG00000251838 NA 2.5850 0.0002
8 ENSG00000262119 novel transcript, sense intronic to NOVA1 2.5850 0.0000
9 ENSG00000278757 U6 spliceosomal RNA 2.4554 0.0000
10 ENSG00000258416 novel transcript 2.3962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000113356 POLR3G RNA polymerase III subunit G -2.1020 0.0000
63172 ENSG00000100395 L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 -2.1016 0.0000
63171 ENSG00000283101 BMS1P21 BMS1 pseudogene 21 -2.1008 0.0000
63170 ENSG00000251009 novel transcript -2.1007 0.0000
63169 ENSG00000249574 novel transcript -2.1001 0.0000
63168 ENSG00000271858 novel transcript, antisense to CACNA2D2 -2.1001 0.0000
63167 ENSG00000227640 SOX21-AS1 SOX21 antisense divergent transcript 1 -2.1000 0.0000
63166 ENSG00000278431 novel transcript, antisense to ANKRD34A -2.0997 0.0000
63165 ENSG00000120324 PCDHB10 protocadherin beta 10 -2.0997 0.0000
63164 ENSG00000241527 CA15P1 CA15 pseudogene 1 -2.0990 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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