Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773558


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M185Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000215284 CHMP5P1 CHMP5 pseudogene 1 2.8074 0.0000
2 ENSG00000272990 novel transcript, antisense to KCNAB1 2.8074 0.0000
3 ENSG00000199879 RNVU1-22 RNA, variant U1 small nuclear 22 2.5850 0.0000
4 ENSG00000214067 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0007
5 ENSG00000255860 folate receptor 3 (gamma) (FOLR3) pseudogene 2.3219 0.0007
7 ENSG00000277752 NA 2.3219 0.0007
8 ENSG00000232149 FERP1 FER tyrosine kinase pseudogene 1 2.2925 0.0000
9 ENSG00000226448 RPL7AP51 ribosomal protein L7a pseudogene 51 2.1768 0.0000
10 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 2.1510 0.0000
63164 ENSG00000231227 novel transcript -1.9063 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261350 novel transcript -1.9095 0.0000
63172 ENSG00000260341 C2orf69P2 chromosome 2 open reading frame 69 pseudogene 2 -1.9095 0.0000
63171 ENSG00000105550 FGF21 fibroblast growth factor 21 -1.9093 0.0000
63170 ENSG00000170500 LONRF2 LON peptidase N-terminal domain and ring finger 2 -1.9090 0.0000
63169 ENSG00000105447 GRWD1 glutamate rich WD repeat containing 1 -1.9082 0.0000
63168 ENSG00000254134 IGHVII-74-1 immunoglobulin heavy variable (II)-74-1 (pseudogene) -1.9077 0.0000
63167 ENSG00000115289 PCGF1 polycomb group ring finger 1 -1.9076 0.0000
63166 ENSG00000165300 SLITRK5 SLIT and NTRK like family member 5 -1.9072 0.0000
63165 ENSG00000163501 IHH Indian hedgehog signaling molecule -1.9066 0.0000
63164 ENSG00000231227 novel transcript -1.9063 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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