Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773559

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773559


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M186Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201846 RNA5SP166 RNA, 5S ribosomal pseudogene 166 3.1699 0.0000
2 ENSG00000046604 DSG2 desmoglein 2 3.0000 0.0000
3 ENSG00000165168 CYBB cytochrome b-245 beta chain 3.0000 0.0000
4 ENSG00000249873 LINC02372 long intergenic non-protein coding RNA 2372 3.0000 0.0000
5 ENSG00000266521 novel transcript 3.0000 0.0000
6 ENSG00000234652 AGPAT5P1 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1 2.8896 0.0000
7 ENSG00000237876 AKR1B1P4 aldo-keto reductase family 1 member B1 pseudogene 4 2.8205 0.0000
8 ENSG00000184564 SLITRK6 SLIT and NTRK like family member 6 2.8074 0.0000
9 ENSG00000228835 novel transcript, antisense to KLHL14 2.8074 0.0000
10 ENSG00000233544 EIF3KP2 eukaryotic translation initiation factor 3 subunit K pseudogene 2 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000267388 novel transcript -2.2472 0.0000
63172 ENSG00000112852 PCDHB2 protocadherin beta 2 -2.2470 0.0000
63171 ENSG00000272667 novel transcript -2.2468 0.0000
63170 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -2.2467 0.0000
63169 ENSG00000259923 novel transcript -2.2464 0.0000
63168 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -2.2462 0.0000
63167 ENSG00000117500 TMED5 transmembrane p24 trafficking protein 5 -2.2461 0.0000
63166 ENSG00000238184 CD81-AS1 CD81 antisense RNA 1 -2.2457 0.0000
63165 ENSG00000276107 novel transcript, sense intronic to THBS1 -2.2456 0.0000
63164 ENSG00000236459 HNRNPA1P22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 -2.2454 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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