Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773560


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M187Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235279 novel transcript 2.8074 0.0001
2 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.8074 0.0001
3 ENSG00000188993 LRRC66 leucine rich repeat containing 66 2.5850 0.0004
4 ENSG00000145817 YIPF5 Yip1 domain family member 5 2.3219 0.0000
5 ENSG00000200238 RNA5SP133 RNA, 5S ribosomal pseudogene 133 2.3219 0.0018
6 ENSG00000201666 NA 2.3219 0.0018
7 ENSG00000237467 USP9YP35 USP9Y pseudogene 35 2.3219 0.0018
8 ENSG00000248237 protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene 2.3219 0.0018
9 ENSG00000260223 novel transcript 2.3219 0.0018
10 ENSG00000274662 RN7SKP236 RN7SK pseudogene 236 2.3219 0.0018

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272533 SNORA28 small nucleolar RNA, H/ACA box 28 -1.8164 0.0000
63172 ENSG00000252446 RNU6-405P RNA, U6 small nuclear 405, pseudogene -1.8160 0.0000
63171 ENSG00000236516 KLF2P4 Kruppel like factor 2 pseudogene 4 -1.8159 0.0000
63170 ENSG00000124208 PEDS1-UBE2V1 PEDS1-UBE2V1 readthrough -1.8159 0.0000
63169 ENSG00000177076 ACER2 alkaline ceramidase 2 -1.8158 0.0000
63168 ENSG00000277717 U6 spliceosomal RNA -1.8156 0.0000
63167 ENSG00000231478 FCF1P9 FCF1 pseudogene 9 -1.8156 0.0000
63166 ENSG00000179588 ZFPM1 zinc finger protein, FOG family member 1 -1.8153 0.0000
63165 ENSG00000164379 FOXQ1 forkhead box Q1 -1.8152 0.0000
63164 ENSG00000165434 PGM2L1 phosphoglucomutase 2 like 1 -1.8149 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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