Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773561

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773561


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M188Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 2.3219 0.0019
2 ENSG00000270911 CTAGE family, member 5 (CTAGE5) pseudogene 2.3219 0.0019
3 ENSG00000271898 MIR4791 microRNA 4791 2.3219 0.0019
4 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 2.1405 0.0000
5 ENSG00000226827 NPM1P11 nucleophosmin 1 pseudogene 11 2.1288 0.0000
6 ENSG00000212459 RNU6-695P RNA, U6 small nuclear 695, pseudogene 2.1175 0.0000
7 ENSG00000251858 NA 2.0850 0.0000
8 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.0566 0.0000
9 ENSG00000254577 novel transcript, sense overlapping TTC17 2.0566 0.0000
10 ENSG00000236720 LINC01741 long intergenic non-protein coding RNA 1741 2.0277 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000110243 APOA5 apolipoprotein A5 -1.9280 0.0000
63172 ENSG00000234952 LINC02674 long intergenic non-protein coding RNA 2674 -1.9275 0.0000
63171 ENSG00000135902 CHRND cholinergic receptor nicotinic delta subunit -1.9273 0.0000
63170 ENSG00000124003 MOGAT1 monoacylglycerol O-acyltransferase 1 -1.9272 0.0000
63169 ENSG00000277758 synaptotagmin-15 -1.9270 0.0000
63168 ENSG00000274712 bromodomain PHD finger transcription factor (BPTF) pseudogene -1.9266 0.0000
63167 ENSG00000238280 novel transcript -1.9263 0.0000
63166 ENSG00000219435 CATSPERZ catsper channel auxiliary subunit zeta -1.9260 0.0000
63165 ENSG00000125285 SOX21 SRY-box transcription factor 21 -1.9258 0.0000
63164 ENSG00000136160 EDNRB endothelin receptor type B -1.9258 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...