Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773562


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M189Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204172 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 3.0000 0.0000
2 ENSG00000264281 ribosomal protein L41 (RPL41) pseudogene 2.8074 0.0002
3 ENSG00000201959 Y RNA 2.5850 0.0000
4 ENSG00000233448 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 2.5850 0.0000
5 ENSG00000249766 keratin 8, type II (KRT8) pseudogene 2.5850 0.0009
6 ENSG00000067533 RRP15 ribosomal RNA processing 15 homolog 2.3219 0.0000
7 ENSG00000163106 HPGDS hematopoietic prostaglandin D synthase 2.3219 0.0000
8 ENSG00000198829 SUCNR1 succinate receptor 1 2.3219 0.0000
9 ENSG00000206889 RNU6-1200P RNA, U6 small nuclear 1200, pseudogene 2.3219 0.0000
10 ENSG00000215540 RBMY2CP RNA binding motif protein Y-linked family 2 member C, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000267200 MIR132 microRNA 132 -1.6967 0.0000
63172 ENSG00000171451 DSEL dermatan sulfate epimerase like -1.6967 0.0000
63171 ENSG00000261420 novel transcript, antisense to BRP44L -1.6966 0.0000
63170 ENSG00000270076 novel transcript -1.6962 0.0000
63169 ENSG00000064692 SNCAIP synuclein alpha interacting protein -1.6961 0.0000
63168 ENSG00000282591 FAM138F family with sequence similarity 138 member F -1.6951 0.0000
63167 ENSG00000270903 HNRNPA3P9 heterogeneous nuclear ribonucleoprotein A3 pseudogene 9 -1.6948 0.0000
63166 ENSG00000246695 RASSF8-AS1 RASSF8 antisense RNA 1 -1.6948 0.0000
63165 ENSG00000110328 GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 -1.6948 0.0000
63164 ENSG00000241749 RPSAP52 ribosomal protein SA pseudogene 52 -1.6944 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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