Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773564


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M191Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229623 METTL21AP1 methyltransferase like 21A pseudogene 1 3.4933 0.0000
2 ENSG00000237709 EEF1A1P28 eukaryotic translation elongation factor 1 alpha 1 pseudogene 28 3.4594 0.0000
3 ENSG00000251783 RNU6-1170P RNA, U6 small nuclear 1170, pseudogene 3.2770 0.0000
4 ENSG00000206899 RNU6-36P RNA, U6 small nuclear 36, pseudogene 3.1699 0.0000
5 ENSG00000258452 HMGN2P2 high mobility group nucleosomal binding domain 2 pseudogene 2 3.0865 0.0000
6 ENSG00000270782 C18orf32 chromosome 18 open reading frame 32 (C18orf32) pseudogene 3.0763 0.0000
7 ENSG00000269570 novel transcript, antisense to ZFP91 3.0624 0.0000
8 ENSG00000189023 MAGEB16 MAGE family member B16 3.0266 0.0000
9 ENSG00000227563 RNF11P2 ring finger protein 11 pseudogene 2 3.0000 0.0000
10 ENSG00000230233 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000178233 TMEM151B transmembrane protein 151B -2.2148 0.0000
63172 ENSG00000257139 LINC02821 long intergenic non-protein coding RNA 2821 -2.2146 0.1381
63171 ENSG00000211797 TRAV17 T cell receptor alpha variable 17 -2.2146 0.1381
63170 ENSG00000236548 RNF217-AS1 RNF217 antisense RNA 1 (head to head) -2.2143 0.0000
63168 ENSG00000259268 novel transcript -2.2132 0.0000
63167 ENSG00000185915 KLHL34 kelch like family member 34 -2.2131 0.0000
63166 ENSG00000086619 ERO1B endoplasmic reticulum oxidoreductase 1 beta -2.2131 0.0000
63165 ENSG00000126790 L3HYPDH trans-L-3-hydroxyproline dehydratase -2.2127 0.0000
63164 ENSG00000181867 FTMT ferritin mitochondrial -2.2121 0.0000
10 ENSG00000230233 novel transcript 3.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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