Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773565


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M192Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248851 fibroblast growth factor binding protein 1 (FGFBP1) pseudogene 4.0061 0.0000
2 ENSG00000258629 NCOA4P1 nuclear receptor coactivator 4 pseudogene 1 3.7610 0.0000
3 ENSG00000202200 Y RNA 3.2297 0.0000
4 ENSG00000178053 MLF1 myeloid leukemia factor 1 3.1699 0.0000
5 ENSG00000196805 SPRR2B small proline rich protein 2B 3.1699 0.0000
6 ENSG00000170801 HTRA3 HtrA serine peptidase 3 3.0939 0.0000
7 ENSG00000042286 AIFM2 apoptosis inducing factor mitochondria associated 2 3.0000 0.0000
8 ENSG00000235143 novel transcript 3.0000 0.0000
9 ENSG00000252530 RNU6-965P RNA, U6 small nuclear 965, pseudogene 3.0000 0.0000
10 ENSG00000233685 OR6L1P olfactory receptor family 6 subfamily L member 1 pseudogene 2.9431 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000250838 novel transcript -2.3191 0.0000
63172 ENSG00000131831 RAI2 retinoic acid induced 2 -2.3190 0.0000
63171 ENSG00000262039 novel transcript, antisense to PHB -2.3186 0.0000
63170 ENSG00000165556 CDX2 caudal type homeobox 2 -2.3181 0.0000
63169 ENSG00000115844 DLX2 distal-less homeobox 2 -2.3178 0.0000
63168 ENSG00000178531 CTXN1 cortexin 1 -2.3177 0.0000
63167 ENSG00000228771 GAGE family member pseudogene -2.3176 0.0000
63166 ENSG00000277223 novel transcript, sense intronic to LGR5 -2.3174 0.0000
63165 ENSG00000176058 TPRN taperin -2.3160 0.0000
63164 ENSG00000128045 RASL11B RAS like family 11 member B -2.3152 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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