Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773566

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773566


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M193Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224657 RBMY2BP RNA binding motif protein Y-linked family 2 member B, pseudogene 1.5850 0.0181
2 ENSG00000237823 CDY19P chromodomain Y-linked 19 pseudogene 1.5850 0.0003
3 ENSG00000252468 RNU2-57P RNA, U2 small nuclear 57, pseudogene 1.5850 0.0003
4 ENSG00000273589 testis specific protein, Y-linked 1 (TSPY1) pseudogene 1.5850 0.0181
5 ENSG00000228933 novel transcript 1.4111 0.0000
6 ENSG00000212282 RNU6-578P RNA, U6 small nuclear 578, pseudogene 1.2925 0.0000
7 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 1.2925 0.0024
8 ENSG00000219627 CYCSP17 CYCS pseudogene 17 1.1785 0.0000
9 ENSG00000249052 novel transcript 1.1462 0.0000
10 ENSG00000281566 novel transcript 1.1462 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264290 novel transcript -1.7743 0.0000
63172 ENSG00000246790 novel transcript, antisense to SORL1 -1.7743 0.0000
63171 ENSG00000252569 RNU6-1153P RNA, U6 small nuclear 1153, pseudogene -1.7740 0.0000
63170 ENSG00000161547 SRSF2 serine and arginine rich splicing factor 2 -1.7738 0.0000
63169 ENSG00000248522 SBF1P1 SET binding factor 1 pseudogene 1 -1.7737 0.0000
63168 ENSG00000185269 NOTUM notum, palmitoleoyl-protein carboxylesterase -1.7734 0.0000
63166 ENSG00000276547 PCDHGB5 protocadherin gamma subfamily B, 5 -1.7732 0.0000
63165 ENSG00000226695 ANKRD20A10P ankyrin repeat domain 20 family member A10, pseudogene -1.7731 0.0000
63164 ENSG00000231069 novel pseudogene -1.7729 0.0000
10 ENSG00000281566 novel transcript 1.1462 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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