Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773567


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M194Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212216 RNU6-816P RNA, U6 small nuclear 816, pseudogene 2.5850 0.0000
2 ENSG00000229221 HNRNPA1P66 heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 2.5850 0.0000
3 ENSG00000236666 POTEH-AS1 POTEH antisense RNA 1 2.5850 0.0000
4 ENSG00000131174 COX7B cytochrome c oxidase subunit 7B 2.4973 0.0000
5 ENSG00000207270 RNU6-601P RNA, U6 small nuclear 601, pseudogene 2.3219 0.0003
6 ENSG00000223874 LINC01921 long intergenic non-protein coding RNA 1921 2.3219 0.0003
7 ENSG00000224219 SEC61GP1 SEC61G pseudogene 1 2.3219 0.0003
8 ENSG00000227408 AMYP1 amylase alpha pseudogene 1 2.3219 0.0003
9 ENSG00000259418 novel transcript, antisense to SORD 2.3219 0.0003
10 ENSG00000265908 novel transcript, antisense to PHF12 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000212128 TAS2R13 taste 2 receptor member 13 -1.9690 0.6200
63172 ENSG00000199224 Y RNA -1.9690 0.6200
63171 ENSG00000144460 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 -1.9690 0.6200
63170 ENSG00000245748 novel transcript, antisense to TBC1D14 and TADA2B -1.9689 0.0000
63169 ENSG00000137449 CPEB2 cytoplasmic polyadenylation element binding protein 2 -1.9672 0.0000
63168 ENSG00000241261 RPL17P19 ribosomal protein L17 pseudogene 19 -1.9664 0.0000
63167 ENSG00000215612 HMX1 H6 family homeobox 1 -1.9663 0.0000
63166 ENSG00000279518 TEC -1.9663 0.0077
63165 ENSG00000257292 FAM166A, pseudogene 9 -1.9662 0.0000
63164 ENSG00000234361 novel transcript -1.9657 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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