Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773568


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M195Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202195 Y RNA 2.8074 0.0000
2 ENSG00000213492 NT5C3AP1 NT5C3A pseudogene 1 2.5850 0.0001
3 ENSG00000214281 HMGN2P39 high mobility group nucleosomal binding domain 2 pseudogene 39 2.5850 0.0001
4 ENSG00000223824 TERF1P6 TERF1 pseudogene 6 2.5850 0.0000
5 ENSG00000273643 PPP1R26P2 protein phosphatase 1 regulatory subunit 26 pseudogene 2 2.5850 0.0001
6 ENSG00000264559 MIR3162 microRNA 3162 2.5005 0.0000
7 ENSG00000201465 NA 2.4047 0.0000
8 ENSG00000220868 MRPL35P1 mitochondrial ribosomal protein L35 pseudogene 1 2.3219 0.0000
9 ENSG00000224924 LINC00320 long intergenic non-protein coding RNA 320 2.3219 0.0004
10 ENSG00000236069 novel transcript 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000074935 TUBE1 tubulin epsilon 1 -1.8646 0.0000
63172 ENSG00000187135 VSTM2B V-set and transmembrane domain containing 2B -1.8637 0.0000
63171 ENSG00000135722 FBXL8 F-box and leucine rich repeat protein 8 -1.8635 0.0000
63170 ENSG00000232956 SNHG15 small nucleolar RNA host gene 15 -1.8630 0.0000
63169 ENSG00000255689 novel transcript -1.8628 0.0000
63168 ENSG00000243207 PPAN-P2RY11 PPAN-P2RY11 readthrough -1.8626 0.0000
63167 ENSG00000050030 NEXMIF neurite extension and migration factor -1.8622 0.0001
63166 ENSG00000265380 novel transcript -1.8617 0.6099
63165 ENSG00000255403 HSPD1P13 heat shock protein family D (Hsp60) member 1 pseudogene 13 -1.8617 0.6099
63164 ENSG00000215339 ZNF705CP zinc finger protein 705C, pseudogene -1.8617 0.6221

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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