Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773569

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773569


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M196Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 2.8074 0.0000
2 ENSG00000235483 GYG2-AS1 GYG2 antisense RNA 1 2.8074 0.0000
3 ENSG00000201607 RNU4-16P RNA, U4 small nuclear 16, pseudogene 2.3219 0.0002
4 ENSG00000224485 USP9YP7 USP9Y pseudogene 7 2.3219 0.0002
5 ENSG00000229236 TTTY10 testis-specific transcript, Y-linked 10 2.3219 0.0002
6 ENSG00000229384 HMGB1P16 high mobility group box 1 pseudogene 16 2.3219 0.0002
7 ENSG00000276871 5.8S ribosomal RNA 2.3219 0.0000
8 ENSG00000279530 TEC 2.3219 0.0002
9 ENSG00000212100 MIR764 microRNA 764 2.1095 0.0000
10 ENSG00000250949 novel transcript 2.0575 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000239112 SNORD123 small nucleolar RNA, C/D box 123 -2.2056 0.0000
63172 ENSG00000238649 SNORD42A small nucleolar RNA, C/D box 42A -2.2052 0.0000
63171 ENSG00000238597 SNORD4B small nucleolar RNA, C/D box 4B -2.2052 0.0000
63170 ENSG00000252224 RNU4ATAC15P RNA, U4atac small nuclear 15, pseudogene -2.2052 0.0000
63169 ENSG00000119900 OGFRL1 opioid growth factor receptor like 1 -2.2052 0.0000
63168 ENSG00000143153 ATP1B1 ATPase Na+/K+ transporting subunit beta 1 -2.2049 0.0000
63167 ENSG00000160606 TLCD1 TLC domain containing 1 -2.2041 0.0000
63166 ENSG00000232936 novel transcript -2.2040 0.0000
63165 ENSG00000102302 FGD1 FYVE, RhoGEF and PH domain containing 1 -2.2037 0.0000
63164 ENSG00000264577 novel transcript, antisense to RPL23A -2.2035 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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