Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773570


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M197Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.9886 0.0000
2 ENSG00000224169 HSFY6P heat shock transcription factor Y-linked 6, pseudogene 2.8074 0.0000
3 ENSG00000270207 novel transcript, antisense to GRM7 2.5850 0.0000
4 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.5000 0.0000
5 ENSG00000213754 KPNA4P1 KPNA4 pseudogene 1 2.4973 0.0000
6 ENSG00000231060 FARSBP1 FARSB pseudogene 1 2.3219 0.0002
7 ENSG00000232841 BRWD1P3 bromodomain and WD repeat domain containing 1 pseudogene 3 2.3219 0.0000
8 ENSG00000235413 KRT18P63 keratin 18 pseudogene 63 2.3219 0.0002
9 ENSG00000239102 RNU7-185P RNA, U7 small nuclear 185 pseudogene 2.3219 0.0000
10 ENSG00000251127 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000249906 novel transcript -2.2539 0.0000
63172 ENSG00000108091 CCDC6 coiled-coil domain containing 6 -2.2538 0.0000
63171 ENSG00000264012 novel transcript, antisense to GATA6 -2.2535 0.0000
63170 ENSG00000253092 NA -2.2533 0.0000
63169 ENSG00000201229 SNORA63D small nucleolar RNA, H/ACA box 63D -2.2533 0.0000
63168 ENSG00000124104 SNX21 sorting nexin family member 21 -2.2532 0.0000
63167 ENSG00000112379 ARFGEF3 ARFGEF family member 3 -2.2532 0.0000
63166 ENSG00000227757 novel transcript -2.2525 0.0000
63165 ENSG00000107566 ERLIN1 ER lipid raft associated 1 -2.2517 0.0000
63164 ENSG00000236782 novel protein -2.2516 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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