Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773571


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M198Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258600 novel transcript 2.8074 0.0000
2 ENSG00000254594 LINC02686 long intergenic non-protein coding RNA 2686 2.3219 0.0002
3 ENSG00000207874 MIR610 microRNA 610 2.0000 0.0017
4 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 2.0000 0.0000
5 ENSG00000233460 RPL35AP31 ribosomal protein L35a pseudogene 31 2.0000 0.0000
6 ENSG00000242810 MRPL42P6 mitochondrial ribosomal protein L42 pseudogene 6 2.0000 0.0000
7 ENSG00000249690 novel transcript, antisense to LRBA 2.0000 0.0017
8 ENSG00000263600 MIR3915 microRNA 3915 2.0000 0.0000
9 ENSG00000279530 TEC 2.0000 0.0017
10 ENSG00000280837 CPS1-IT1 CPS1 intronic transcript 1 2.0000 0.0017

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000156959 LHFPL4 LHFPL tetraspan subfamily member 4 -2.2157 0.0000
63172 ENSG00000214188 ST7-OT4 ST7 overlapping transcript 4 -2.2153 0.0000
63171 ENSG00000175505 CLCF1 cardiotrophin like cytokine factor 1 -2.2153 0.0000
63170 ENSG00000233569 novel transcript -2.2151 0.0000
63169 ENSG00000237048 TTTY12 testis-specific transcript, Y-linked 12 -2.2146 0.6310
63168 ENSG00000232618 novel transcript -2.2141 0.0000
63167 ENSG00000274356 ral guanine nucleotide dissociation stimulator (RALGDS) pseudogene -2.2138 0.0000
63166 ENSG00000230067 HSPD1P6 heat shock protein family D (Hsp60) member 1 pseudogene 6 -2.2136 0.0000
63165 ENSG00000188029 CTSL3P cathepsin L family member 3, pseudogene -2.2130 0.0000
63164 ENSG00000212304 SNORD12 small nucleolar RNA, C/D box 12 -2.2127 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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