Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773572


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M199Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 3.0000 0.0000
2 ENSG00000226426 novel transcript 2.7737 0.0000
3 ENSG00000207589 MIR508 microRNA 508 2.5850 0.0000
4 ENSG00000207731 MIR506 microRNA 506 2.5850 0.0000
5 ENSG00000207969 MIR507 microRNA 507 2.5850 0.0000
6 ENSG00000264131 novel transcript 2.5850 0.0000
7 ENSG00000267430 proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5) pseudogene 2.5850 0.0000
8 ENSG00000202279 Y RNA 2.3219 0.0000
9 ENSG00000223189 RNU6-177P RNA, U6 small nuclear 177, pseudogene 2.3219 0.0000
10 ENSG00000232587 EEF1A1P3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000204520 MICA MHC class I polypeptide-related sequence A -1.9596 0.0000
63172 ENSG00000265094 novel transcript -1.9595 0.0000
63171 ENSG00000153551 CMTM7 CKLF like MARVEL transmembrane domain containing 7 -1.9593 0.0000
63170 ENSG00000261314 novel transcript, sense overlapping SLC30A1 -1.9591 0.0000
63169 ENSG00000272277 novel transcript, antisense to RIPK1 -1.9585 0.0000
63168 ENSG00000168016 TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 -1.9583 0.0000
63167 ENSG00000252783 RNU6-835P RNA, U6 small nuclear 835, pseudogene -1.9580 0.0000
63166 ENSG00000263585 novel transcript, antisense PYCR1 -1.9579 0.0000
63165 ENSG00000276690 NA -1.9579 0.0000
63164 ENSG00000225510 PCDH8P1 protocadherin 8 pseudogene 1 -1.9578 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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