Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773574


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M201Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255413 zinc finger protein 654 (ZNF654) pseudogene 2.5850 0.0001
2 ENSG00000258394 novel transcript, sense overlapping to a novel protein 2.5850 0.0001
3 ENSG00000279595 TEC 2.3774 0.0000
4 ENSG00000183432 ZBTB8OSP1 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 2.3219 0.0005
5 ENSG00000200849 Y RNA 2.3219 0.0000
6 ENSG00000205412 HNRNPA1P20 heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 2.3219 0.0000
7 ENSG00000224467 TANK-AS1 TANK antisense RNA 1 2.3219 0.0000
8 ENSG00000242560 RN7SL797P RNA, 7SL, cytoplasmic 797, pseudogene 2.3219 0.0000
9 ENSG00000248770 mitochondrially encoded cytochrome c oxidase I (MT-COI) pseudogene 2.3219 0.0005
10 ENSG00000250839 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264569 DCXR-DT DCXR divergent transcript -2.0643 0.0000
63172 ENSG00000257078 zinc finger protein 655 (ZNF655) pseudogene -2.0643 0.0000
63171 ENSG00000196376 SLC35F1 solute carrier family 35 member F1 -2.0640 0.0000
63170 ENSG00000197406 DIO3 iodothyronine deiodinase 3 -2.0628 0.0000
63169 ENSG00000169418 NPR1 natriuretic peptide receptor 1 -2.0623 0.0000
63168 ENSG00000166341 DCHS1 dachsous cadherin-related 1 -2.0621 0.0000
63167 ENSG00000156925 ZIC3 Zic family member 3 -2.0619 0.0000
63166 ENSG00000223963 THAP12P8 THAP domain containing 12 pseudogene 8 -2.0615 0.0000
63165 ENSG00000116560 SFPQ splicing factor proline and glutamine rich -2.0609 0.0000
63164 ENSG00000081803 CADPS2 calcium dependent secretion activator 2 -2.0608 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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