Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773575

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773575


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M202Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259047 UDP glucuronosyltransferase 2 family, polypeptide B15 (UGT2B15) pseudogene 3.1699 0.0000
2 ENSG00000214784 RPS3AP21 RPS3A pseudogene 21 2.9154 0.0000
3 ENSG00000230418 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 2.9037 0.0000
4 ENSG00000254913 novel transcript 2.6610 0.0000
5 ENSG00000202358 RNU6-652P RNA, U6 small nuclear 652, pseudogene 2.3730 0.0000
6 ENSG00000183098 GPC6 glypican 6 2.3219 0.0004
7 ENSG00000265411 RN7SL656P RNA, 7SL, cytoplasmic 656, pseudogene 2.3219 0.0000
8 ENSG00000219881 GAPDHP42 glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 2.1073 0.0000
9 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 2.0000 0.0029
10 ENSG00000202283 NA 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000214336 FOXI3 forkhead box I3 -2.0261 0.0000
63172 ENSG00000197705 KLHL14 kelch like family member 14 -2.0257 0.0000
63171 ENSG00000269044 novel transcript, sense intronic C19orf42 -2.0253 0.0000
63170 ENSG00000188938 FAM120AOS family with sequence similarity 120A opposite strand -2.0251 0.0000
63169 ENSG00000152082 MZT2B mitotic spindle organizing protein 2B -2.0251 0.0000
63168 ENSG00000101474 APMAP adipocyte plasma membrane associated protein -2.0243 0.0000
63167 ENSG00000106113 CRHR2 corticotropin releasing hormone receptor 2 -2.0243 0.0000
63166 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -2.0230 0.0000
63165 ENSG00000122870 BICC1 BicC family RNA binding protein 1 -2.0228 0.0000
63164 ENSG00000244501 RN7SL623P RNA, 7SL, cytoplasmic 623, pseudogene -2.0228 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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