Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773576

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773576


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M203Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280317 TEC 2.5850 0.0000
2 ENSG00000231646 FSIP2-AS1 FSIP2 antisense RNA 1 2.3219 0.0004
3 ENSG00000237135 DDX10P1 DEAD-box helicase 10 pseudogene 1 2.3219 0.0004
4 ENSG00000238529 RNU6-599P RNA, U6 small nuclear 599, pseudogene 2.3219 0.0000
5 ENSG00000249936 RAC1P2 Rac family small GTPase 1 pseudogene 2 2.3219 0.0000
6 ENSG00000253078 RNU6-1116P RNA, U6 small nuclear 1116, pseudogene 2.3219 0.0000
7 ENSG00000272632 novel transcript 2.3219 0.0004
8 ENSG00000277306 NA 2.3219 0.0004
9 ENSG00000253532 novel transcript 2.2146 0.0000
10 ENSG00000259411 HNRNPA1P45 heterogeneous nuclear ribonucleoprotein A1 pseudogene 45 2.2034 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000263905 RN7SL555P RNA, 7SL, cytoplasmic 555, pseudogene -2.0981 0.0000
63172 ENSG00000266563 EIF1P5 eukaryotic translation initiation factor 1 pseudogene 5 -2.0978 0.0000
63171 ENSG00000163605 PPP4R2 protein phosphatase 4 regulatory subunit 2 -2.0972 0.0000
63170 ENSG00000114446 IFT57 intraflagellar transport 57 -2.0965 0.0000
63169 ENSG00000184702 SEPTIN5 septin 5 -2.0963 0.0000
63168 ENSG00000198984 MIR345 microRNA 345 -2.0958 0.0000
63167 ENSG00000231920 NEBL-AS1 NEBL antisense RNA 1 -2.0951 0.0000
63166 ENSG00000257556 LINC02298 long intergenic non-protein coding RNA 2298 -2.0950 0.0000
63165 ENSG00000226645 novel transcript -2.0948 0.0000
63164 ENSG00000278901 novel transcript, antisense to PCDHA13 -2.0947 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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