Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773577

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773577


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M204Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252553 RNA5SP73 RNA, 5S ribosomal pseudogene 73 2.3219 0.0000
2 ENSG00000229246 LINC00377 long intergenic non-protein coding RNA 377 2.0763 0.0000
3 ENSG00000273369 novel transcript, antisense to GUF1 2.0000 0.0041
4 ENSG00000261630 novel transcript, antisense to FTO 1.6250 0.0000
5 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 1.5850 0.0254
6 ENSG00000224188 UBE2D3P4 ubiquitin conjugating enzyme E2 D3 pseudogene 4 1.5850 0.0254
7 ENSG00000229208 RBMY2NP RNA binding motif protein Y-linked family 2 member N, pseudogene 1.5850 0.0254
8 ENSG00000234289 H2BS1 H2B.S histone 1 1.5850 0.0254
9 ENSG00000248339 LINC02504 long intergenic non-protein coding RNA 2504 1.5850 0.0254
10 ENSG00000263189 Zinc finger protein pseudogene 1.4633 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000160606 TLCD1 TLC domain containing 1 -1.9488 0.0000
63172 ENSG00000267507 nuclear transport factor 2, pseudogene -1.9486 0.0000
63171 ENSG00000101200 AVP arginine vasopressin -1.9485 0.0000
63170 ENSG00000215788 TNFRSF25 TNF receptor superfamily member 25 -1.9481 0.0000
63169 ENSG00000185483 ROR1 receptor tyrosine kinase like orphan receptor 1 -1.9478 0.0000
63168 ENSG00000274515 novel transcript, antisense to IMP3 -1.9477 0.0000
63167 ENSG00000264145 dopamine receptor D5 (DRD5) pseudogene -1.9476 0.0000
63166 ENSG00000269054 novel transcript, antisense to ZNF497 -1.9476 0.0000
63165 ENSG00000274520 NA -1.9473 0.0000
63164 ENSG00000111885 MAN1A1 mannosidase alpha class 1A member 1 -1.9472 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...