Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773578

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773578


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M205Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186124 OR9M1P olfactory receptor family 9 subfamily M member 1, pseudogene 1.5850 0.0302
2 ENSG00000207476 RNU6-286P RNA, U6 small nuclear 286, pseudogene 1.5850 0.0302
3 ENSG00000231762 novel pseudogene 1.5850 0.0302
4 ENSG00000242097 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene 1.5850 0.0009
5 ENSG00000248735 R3HDM2P1 R3H domain containing 2 pseudogene 1 1.5850 0.0000
6 ENSG00000259798 novel transcript HYDIN 1.5850 0.0302
7 ENSG00000277306 NA 1.5850 0.0009
8 ENSG00000278008 PPP1R26P4 protein phosphatase 1 regulatory subunit 26 pseudogene 4 1.5850 0.0302
63164 ENSG00000158716 DUSP23 dual specificity phosphatase 23 -1.5737 0.0000
63165 ENSG00000277469 NA -1.5737 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000254973 novel transcript -1.5747 0.0000
63172 ENSG00000213244 H3P4 H3 histone pseudogene 4 -1.5744 0.0000
63171 ENSG00000277311 NA -1.5744 0.0000
63170 ENSG00000253878 novel transcript -1.5744 0.0000
63169 ENSG00000181652 ATG9B autophagy related 9B -1.5740 0.0000
63168 ENSG00000250786 SNHG18 small nucleolar RNA host gene 18 -1.5739 0.0000
63167 ENSG00000254102 novel transcript -1.5738 0.0000
63166 ENSG00000103254 ANTKMT adenine nucleotide translocase lysine methyltransferase -1.5738 0.0000
63165 ENSG00000277469 NA -1.5737 0.0000
63164 ENSG00000158716 DUSP23 dual specificity phosphatase 23 -1.5737 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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