Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773579

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773579


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M206Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000165246 NLGN4Y neuroligin 4 Y-linked 3.1699 0.0000
2 ENSG00000226068 HNRNPA3P4 heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 3.1699 0.0000
3 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 3.0000 0.0000
4 ENSG00000263199 myosin, light chain 12-like, regulatory pseudogene 2.8074 0.0000
5 ENSG00000229359 PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 2.7436 0.0000
6 ENSG00000182010 RTKN2 rhotekin 2 2.5850 0.0000
7 ENSG00000202395 RN7SKP1 RN7SK pseudogene 1 2.5850 0.0000
8 ENSG00000279264 tec 2.5850 0.0000
9 ENSG00000201950 SNORD113-9 small nucleolar RNA, C/D box 113-9 2.3219 0.0002
10 ENSG00000207656 MIR489 microRNA 489 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000250486 FAM218A family with sequence similarity 218 member A -1.9655 0.0052
63172 ENSG00000249252 C1QTNF7-AS1 C1QTNF7 antisense RNA 1 -1.9650 0.1008
63171 ENSG00000249184 novel transcript -1.9650 0.0051
63170 ENSG00000207032 Y RNA -1.9641 0.0000
63169 ENSG00000267062 novel transcript, antisense to PRDX2 -1.9640 0.0000
63168 ENSG00000265766 CXADRP3 CXADR pseudogene 3 -1.9638 0.0000
63167 ENSG00000258722 CKAP2P1 cytoskeleton associated protein 2 pseudogene 1 -1.9635 0.0000
63166 ENSG00000276141 WHAMMP3 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 -1.9631 0.0000
63165 ENSG00000273549 Metazoan signal recognition particle RNA -1.9629 0.0000
63164 ENSG00000227148 novel transcript -1.9628 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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