Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773580


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M207Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000182854 OR4F15 olfactory receptor family 4 subfamily F member 15 3.0000 0.0000
2 ENSG00000251552 COQ10BP2 coenzyme Q10B pseudogene 2 2.9886 0.0000
3 ENSG00000221206 RNU6ATAC15P RNA, U6atac small nuclear 15, pseudogene 2.5850 0.0003
4 ENSG00000253951 CCT3P1 chaperonin containing TCP1 subunit 3 pseudogene 1 2.5850 0.0003
5 ENSG00000264564 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.5850 0.0003
6 ENSG00000202339 RNU4-45P RNA, U4 small nuclear 45, pseudogene 2.3219 0.0014
7 ENSG00000251586 TET2-AS1 TET2 antisense RNA 1 2.3219 0.0000
8 ENSG00000272489 novel transcript 2.3219 0.0014
9 ENSG00000276672 novel transcript, sense intronic to RFC3 2.3219 0.0000
10 ENSG00000278967 novel transcript 2.2049 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000271474 novel transcript, antisense to UNC5C -1.8443 0.0000
63172 ENSG00000224879 novel transcript -1.8441 0.0002
63171 ENSG00000239389 PCDHA13 protocadherin alpha 13 -1.8439 0.0000
63170 ENSG00000275393 novel transcript, sense intronic to C16orf74 -1.8437 0.0000
63169 ENSG00000187902 SHISA7 shisa family member 7 -1.8436 0.0000
63168 ENSG00000256870 SLC5A8 solute carrier family 5 member 8 -1.8435 0.0000
63167 ENSG00000136867 SLC31A2 solute carrier family 31 member 2 -1.8429 0.0000
63166 ENSG00000183496 MEX3B mex-3 RNA binding family member B -1.8425 0.0000
63165 ENSG00000196972 SMIM10L2B small integral membrane protein 10 like 2B -1.8418 0.0000
63164 ENSG00000164938 TP53INP1 tumor protein p53 inducible nuclear protein 1 -1.8418 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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