Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773581


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M208Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280136 novel transcript 2.5432 0.0000
2 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.5421 0.0000
3 ENSG00000247627 MTND4P12 MT-ND4 pseudogene 12 2.5061 0.0000
4 ENSG00000263963 NA 2.5061 0.0000
5 ENSG00000198868 MTND4LP30 MT-ND4L pseudogene 30 2.4455 0.0000
6 ENSG00000249192 MTND3P25 MT-ND3 pseudogene 25 2.4317 0.0000
7 ENSG00000275664 NA 2.4032 0.0000
8 ENSG00000275950 MIR6724-1 microRNA 6724-1 2.4032 0.0000
9 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.3986 0.0000
10 ENSG00000248923 MTND5P11 MT-ND5 pseudogene 11 2.3838 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000229871 RPSAP20 ribosomal protein SA pseudogene 20 -1.0000 0.2977
63172 ENSG00000229697 FAM242E family with sequence similarity 242 member E -1.0000 0.0886
63171 ENSG00000229532 zinc finger protein pseudogene -1.0000 0.0079
63170 ENSG00000229400 CNIH3-AS1 CNIH3 antisense RNA 1 -1.0000 0.0886
63169 ENSG00000229301 novel transcript -1.0000 0.0000
63168 ENSG00000229072 HMGN2P24 high mobility group nucleosomal binding domain 2 pseudogene 24 -1.0000 0.0264
63167 ENSG00000228672 PROB1 proline rich basic protein 1 -1.0000 0.0000
63166 ENSG00000228317 novel transcript -1.0000 0.2977
63165 ENSG00000227923 TP53 target 3 (TP53TG3) pseudogene -1.0000 0.0000
63164 ENSG00000227726 novel transcript -1.0000 0.0023

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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