Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773582


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M209Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000150732 novel zinc finger protein pseudogene 2.6924 0.0000
2 ENSG00000212358 RNU6-837P RNA, U6 small nuclear 837, pseudogene 2.5850 0.0001
3 ENSG00000253472 mediator complex subunit 13 (MED13) pseudogene 2.4096 0.0000
4 ENSG00000188558 OR2G6 olfactory receptor family 2 subfamily G member 6 2.3219 0.0000
5 ENSG00000259781 HMGB1P6 high mobility group box 1 pseudogene 6 2.3219 0.0006
6 ENSG00000253425 HSPA8P13 heat shock protein family A (Hsp70) member 8 pseudogene 13 2.1887 0.0000
7 ENSG00000202191 SNORD113-1 small nucleolar RNA, C/D box 113-1 2.1610 0.0000
8 ENSG00000212384 SNORD113-2 small nucleolar RNA, C/D box 113-2 2.1610 0.0000
9 ENSG00000267565 novel transcript, antisense to ZNF253 2.1610 0.0000
10 ENSG00000243122 ribosomal protein S15 (RPS15) pseudogene 2.0431 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000164120 HPGD 15-hydroxyprostaglandin dehydrogenase -1.8999 0.0000
63172 ENSG00000230661 YY1P1 YY1 transcription factor pseudogene 1 -1.8994 0.0000
63171 ENSG00000237782 PLLPP1 PLLP pseudogene 1 -1.8993 0.0000
63170 ENSG00000199636 Y RNA -1.8990 0.0000
63169 ENSG00000154856 APCDD1 APC down-regulated 1 -1.8985 0.0000
63168 ENSG00000143869 GDF7 growth differentiation factor 7 -1.8984 0.0000
63167 ENSG00000270384 RNU1-154P RNA, U1 small nuclear 154, pseudogene -1.8982 0.0000
63166 ENSG00000197457 STMN3 stathmin 3 -1.8973 0.0000
63165 ENSG00000257913 DDN-AS1 DDN and PRKAG1 antisense RNA 1 -1.8971 0.0000
63164 ENSG00000274139 novel transcript -1.8967 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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