Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773584


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M211Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200197 RNU1-21P RNA, U1 small nuclear 21, pseudogene 3.5431 0.0000
2 ENSG00000199354 RNA5SP273 RNA, 5S ribosomal pseudogene 273 3.1699 0.0000
3 ENSG00000234173 novel transcript, antisense to PCDH15 3.1699 0.0000
4 ENSG00000235020 novel transcript 2.8962 0.0000
5 ENSG00000212628 RNA5SP241 RNA, 5S ribosomal pseudogene 241 2.8219 0.0000
6 ENSG00000213352 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 2.8178 0.0000
7 ENSG00000183313 OR52L1 olfactory receptor family 52 subfamily L member 1 2.5850 0.0001
8 ENSG00000199856 Small nucleolar RNA U3 2.5850 0.0001
9 ENSG00000205495 OR52J3 olfactory receptor family 52 subfamily J member 3 2.5850 0.0000
10 ENSG00000219547 RPL17P25 ribosomal protein L17 pseudogene 25 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000049245 VAMP3 vesicle associated membrane protein 3 -2.2664 0.0000
63172 ENSG00000233071 RPSAP59 ribosomal protein SA pseudogene 59 -2.2657 0.0018
63171 ENSG00000180730 SHISA2 shisa family member 2 -2.2656 0.0000
63170 ENSG00000188938 FAM120AOS family with sequence similarity 120A opposite strand -2.2650 0.0000
63169 ENSG00000282975 LINC02034 long intergenic non-protein coding RNA 2034 -2.2632 0.0000
63168 ENSG00000263366 ABHD17AP5 ABHD17A pseudogene 5 -2.2630 0.0000
63167 ENSG00000100836 PABPN1 poly(A) binding protein nuclear 1 -2.2630 0.0000
63166 ENSG00000273321 novel transcript -2.2630 0.0000
63165 ENSG00000136943 CTSV cathepsin V -2.2629 0.0000
63164 ENSG00000265918 RN7SL543P RNA, 7SL, cytoplasmic 543, pseudogene -2.2626 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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