Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773585


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M212Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279342 novel transcript, sense intronic to MSANTD2 3.3219 0.0000
2 ENSG00000276810 ribosomal protein L18a (RPL18A) pseudogene 2.8074 0.0000
3 ENSG00000264232 LINC01916 long intergenic non-protein coding RNA 1916 2.5850 0.0001
4 ENSG00000168131 OR2B2 olfactory receptor family 2 subfamily B member 2 2.4842 0.0000
5 ENSG00000233605 LINC01851 long intergenic non-protein coding RNA 1851 2.3219 0.0000
6 ENSG00000239941 novel transcript 2.3219 0.0000
7 ENSG00000249052 novel transcript 2.3219 0.0005
8 ENSG00000258505 leucine-rich pentatricopeptide repeat containing (LRPPRC) pseudogene 2.3219 0.0005
10 ENSG00000197023 OR51A6P olfactory receptor family 51 subfamily A member 6 pseudogene 2.2034 0.0000
63164 ENSG00000229848 novel transcript, antisense to ACTG1 -2.1592 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230559 RPL17P12 ribosomal protein L17 pseudogene 12 -2.1610 0.6040
63172 ENSG00000184617 ZNF840P zinc finger protein 840, pseudogene -2.1610 0.6040
63171 ENSG00000100100 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 -2.1607 0.0000
63170 ENSG00000244399 RN7SL251P RNA, 7SL, cytoplasmic 251, pseudogene -2.1607 0.0000
63169 ENSG00000260519 novel transcript, antisense to ATP8A1 -2.1605 0.0000
63168 ENSG00000217442 SYCE3 synaptonemal complex central element protein 3 -2.1601 0.0000
63167 ENSG00000125533 BHLHE23 basic helix-loop-helix family member e23 -2.1600 0.0000
63166 ENSG00000080822 CLDND1 claudin domain containing 1 -2.1599 0.0000
63165 ENSG00000198585 NUDT16 nudix hydrolase 16 -2.1598 0.0000
63164 ENSG00000229848 novel transcript, antisense to ACTG1 -2.1592 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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