Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773587


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M214Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000217160 MTCO2P31 MT-CO2 pseudogene 31 2.5850 0.0000
2 ENSG00000218776 MTATP6P31 MT-ATP6 pseudogene 31 2.5850 0.0000
3 ENSG00000242246 mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene 2.5850 0.0000
4 ENSG00000255486 tripartite motif-containing protein (TRIM) pseudogene 2.5850 0.0000
5 ENSG00000201644 Y RNA 2.3350 0.0000
6 ENSG00000171014 OR4D5 olfactory receptor family 4 subfamily D member 5 2.3219 0.0000
7 ENSG00000206034 DEFB109B defensin beta 109B 2.3219 0.0000
8 ENSG00000210825 SNORA40 small nucleolar RNA, H/ACA box 40 2.3219 0.0005
9 ENSG00000248627 novel transcript 2.3219 0.0005
10 ENSG00000249579 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000103254 ANTKMT adenine nucleotide translocase lysine methyltransferase -1.9673 0.0000
63172 ENSG00000158301 GPRASP2 G protein-coupled receptor associated sorting protein 2 -1.9671 0.0000
63171 ENSG00000226372 DCAF8L1 DDB1 and CUL4 associated factor 8 like 1 -1.9671 0.0000
63170 ENSG00000238358 novel transcript -1.9662 0.0000
63169 ENSG00000278932 novel transcript -1.9655 0.0000
63168 ENSG00000251493 FOXD1 forkhead box D1 -1.9655 0.0000
63167 ENSG00000239572 novel transcript -1.9654 0.0000
63166 ENSG00000139289 PHLDA1 pleckstrin homology like domain family A member 1 -1.9653 0.0000
63165 ENSG00000173157 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 -1.9652 0.0000
63164 ENSG00000166595 CIAO2B cytosolic iron-sulfur assembly component 2B -1.9651 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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