Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773588

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773588


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M215Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234860 novel transcript 2.8074 0.0000
2 ENSG00000206629 RNU1-63P RNA, U1 small nuclear 63, pseudogene 2.3219 0.0002
3 ENSG00000212428 Small nucleolar RNA SNORD115 2.3219 0.0002
4 ENSG00000222578 RNA5SP345 RNA, 5S ribosomal pseudogene 345 2.3219 0.0000
5 ENSG00000225924 TAB2-AS1 TAB2 antisense RNA 1 2.3219 0.0002
6 ENSG00000228814 heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) pseudogene 2.3219 0.0002
7 ENSG00000251126 novel transcript, antisense to ANK2 2.3219 0.0002
8 ENSG00000255076 novel transcript 2.3219 0.0002
9 ENSG00000261654 novel transcript, sense overlapping C1orf103 2.3219 0.0002
10 ENSG00000262732 novel transcript, antisense to ERCC4 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000179058 C9orf50 chromosome 9 open reading frame 50 -1.9403 0.0000
63172 ENSG00000207432 U8 small nucleolar RNA -1.9402 0.0000
63170 ENSG00000095203 EPB41L4B erythrocyte membrane protein band 4.1 like 4B -1.9401 0.0000
63169 ENSG00000267336 EIF4A2P1 eukaryotic translation initiation factor 4A2 pseudogene 1 -1.9399 0.0000
63168 ENSG00000204555 CFTRP3 CFTR pseudogene 3 -1.9387 0.3892
63167 ENSG00000224366 carcinoembryonic antigen-related cell adhesion molecule 21 (CEACAM21) pseudogene -1.9386 0.0001
63166 ENSG00000269586 CT45A10 cancer/testis antigen family 45 member A10 -1.9383 0.6019
63165 ENSG00000187372 PCDHB13 protocadherin beta 13 -1.9382 0.0000
63164 ENSG00000279068 novel transcript -1.9370 0.0000
10 ENSG00000262732 novel transcript, antisense to ERCC4 2.3219 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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