Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773589

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773589


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M216Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279671 TEC 3.1699 0.0000
2 ENSG00000270074 novel transcript 2.8074 0.0000
3 ENSG00000249958 CCT7P2 chaperonin containing TCP1 subunit 7 pseudogene 2 2.5850 0.0000
4 ENSG00000263382 novel transcript 2.5850 0.0000
5 ENSG00000273085 OR52E1 olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) 2.5850 0.0000
6 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.5480 0.0000
7 ENSG00000237349 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa (NDUFB3) pseudogene 2.5000 0.0000
8 ENSG00000226626 NOP56P2 NOP56 ribonucleoprotein pseudogene 2 2.3219 0.0002
9 ENSG00000234829 IFNA17 interferon alpha 17 2.3219 0.0002
10 ENSG00000238561 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000263301 novel transcript, antisense to FGF11 -2.1446 0.0000
63172 ENSG00000248167 TRIM39-RPP21 TRIM39-RPP21 readthrough -2.1443 0.0000
63171 ENSG00000260159 family with sequence similarity 108, member A1 (FAM108A1) pseudogene -2.1441 0.0000
63170 ENSG00000271234 novel transcript -2.1440 0.0000
63169 ENSG00000223826 LINC01870 long intergenic non-protein coding RNA 1870 -2.1437 0.0000
63168 ENSG00000236394 novel transcript -2.1437 0.0000
63167 ENSG00000178573 MAF MAF bZIP transcription factor -2.1436 0.0000
63166 ENSG00000226075 PHKG1P1 phosphorylase kinase catalytic subunit gamma 1 pseudogene 1 -2.1428 0.0000
63165 ENSG00000135736 CCDC102A coiled-coil domain containing 102A -2.1422 0.0000
63164 ENSG00000173486 FKBP2 FKBP prolyl isomerase 2 -2.1420 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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