Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773590

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773590


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M217Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275508 zinc finger, MYM-type 1 (ZMYM1) pseudogene 3.7004 0.0000
2 ENSG00000280136 novel transcript 3.2340 0.0000
3 ENSG00000258039 novel transcript, antisense & intronic to ANKS1B 2.8074 0.0000
4 ENSG00000278433 MIR6070 microRNA 6070 2.7363 0.0000
5 ENSG00000250666 LINC01596 long intergenic non-protein coding RNA 1596 2.6819 0.0000
6 ENSG00000232668 keratin associated protein 5-11 (KRTAP5-11) pseudogene 2.6643 0.0000
7 ENSG00000226262 PHKBP1 phosphorylase kinase regulatory subunit beta pseudogene 1 2.5850 0.0000
8 ENSG00000229182 MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 2.5850 0.0000
9 ENSG00000251492 eukaryotic translation termination factor 1 (ETF1) pseudogene 2.5850 0.0035
10 ENSG00000265433 MIR4447 microRNA 4447 2.5850 0.0035

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000248778 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 (DDX50) pseudogene -1.5850 0.1866
63172 ENSG00000248462 NENFP3 neudesin neurotrophic factor pseudogene 3 -1.5850 0.3120
63171 ENSG00000248443 novel transcript -1.5850 0.3120
63170 ENSG00000248300 LINC02360 long intergenic non-protein coding RNA 2360 -1.5850 1.0000
63169 ENSG00000248200 ribosomal protein L17 (RPL17) pseudogene -1.5850 1.0000
63168 ENSG00000244057 LCE3C late cornified envelope 3C -1.5850 0.1866
63167 ENSG00000243974 VTI1BP1 vesicle transport through interaction with t-SNAREs 1B pseudogene 1 -1.5850 0.3120
63166 ENSG00000243687 RPL35AP10 ribosomal protein L35a pseudogene 10 -1.5850 0.3120
63165 ENSG00000242381 RN7SL741P RNA, 7SL, cytoplasmic 741, pseudogene -1.5850 0.0607
63164 ENSG00000242186 pseudogene similar to part of taxol resistance associated gene 3 -1.5850 0.1866

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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